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Image analysis user guides

  1. Home
  2. Research
  3. Facilities
  4. QBI Advanced Microscopy Facility

 

Before you start

Planning your experiment

Fixation using PFA

Nature Protocols Tutorial: Guidance for quantitative confocal microscopy

Data Storage through RDM

QBI Data Storage through RDM

OMERO data storage through RDM

Deconvolution

Huygens Professional

Cropping Slide Scanner Images

SlideCrop

BatchCrop

QuPath (prepared by N. Yates)

Imaris

Cell counting on Slide Scanner Images

Creating a surface

Masking a channel with a Surface

Automated filament tracing

Semi-automated filament tracing

Colocolisation analysis

Stereology

Stereology workflow

Cloud Storage

OMERO

OMERO scripts

Make OMERO data publicly available

  • Microscopy facility instruments
  • Microscope user guides
  • Image analysis user guides
    • Analysis Software
  • Events

Book an instrument or training:

Book now

Contact

Microscopy Facility Manager
Rumelo Amor
r.amor@uq.edu.au

Senior Microscopy Officer
Arnaud Gaudin
a.gaudin@uq.edu.au

Senior Microscopy Officer
Andrew Thompson
a.thompson4@uq.edu.au

Histology Facility Manager 
Rob Sullivan
qbi.histology@uq.edu.au

To contact the microscopy team please use:
qbi.microscopy@uq.edu.au 

QBI Guide to Histology and Microscopy

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