Gilles C. Vanwalleghem, Lena Constantin, and Ethan K. Scott (2020). 
Calcium imaging and the curse of negativity. 
Frontiers in Neural Circuits
URL: Vanwalleghem et al, 2020

Rebecca E. Poulsen, Leandro A. Sholz, Lena Constantin, Itia Favre-Bulle, Gilles C. Vanwalleghem, and Ethan K. Scott (2020). 
Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system.
Current Biology
URL: Poulsen et al, 2020


Alexander J. Stevenson, Gilles Vanwalleghem, Teneale A. Stewart, Nicholas D. Condon, Bethan Lloyd-Lewis, Natascia Marino, James W. Putney, Ethan K. Scott, Adam D. Ewing, Felicity M. Davis (2020). 
Multiscale activity imaging in mammary gland reveals how oxytocin enables lactation. 
Proceedings of the National Academy of Sciences USA
URL: Stevenson et al, 2020

Emily S. Wong, Dawei Zheng, Siew Z. Tan, Neil L. Bower, Victoria Garside, Gilles Vanwalleghem, Federico Gaiti, Ethan K. Scott, Benjamin M. Hogan, Kazu Kikuchi, Edwina McGlinn, Mathias Francois, and Bernard M. Degnan (2020). Deep conservation of the enhancer regulatory code in animals. 
Science. 370 (6517). Wong et al, 2020

Gilles Vanwalleghem, Kevin Schuster, Michael A. Taylor, Itia A. Favre-Bulle and Ethan K. Scott (2020).
Brain-wide mapping of water flow perception in zebrafish.
The Journal of Neuroscience. 40 (26): 4130-4144.
URL: Vanwalleghem et al, 2020

Ethan K. Scott (2020).
Internal brain states in motion.
Nature. 577 (7789): 175-176.
URL: Scott, 2020

Itia A. Favre-Bulle, Michael A. Taylor, Emmanuel Marquez-Legorreta, Gilles Vanwalleghem, Rebeca E. Poulsen, Halina Rubinsztein-Dunlop and Ethan K. Scott (2020).
Sound generation in zebrafish with Bio-Opto-Acoustics (BOA).
Nature Communications
URL: Favre-Bulle et al, 2020

Lena Constantin, Rebecca E. Poulsen, Itia A. Favre-Bulle, Michael A. Taylor, Biao Sun, Geoffrey J. Goodhill, Gilles C. Vanwalleghem, and Ethan K. Scott (2020).
Altered brain-wide auditory networks in fmr1-mutant larval zebrafish.
BMC Biology
URL: Constantin et al, 2020 


Emmanuel Marquez-Legorreta, Lena Constantin, Marielle Piber, Itia A. Favre-Bulle, Michael A. Taylor, Gilles C. Vanwalleghem, and Ethan Scott (2019).
Brain-wide visual habituation networks in wild type and fmr1 zebrafish.
URL: Marquez-Legorreta et al, 2019

Itia A. Favre-Bulle, Alexander B. Stilgoe, Ethan K. Scott, and Halina Rubinsztein-Dunlop (2019).
Optical Trapping in vivo: Theory, Practice, and Applications.
Nanophotonics. 8 (6): 1023-1040. [IF 6.91].
URL: Favre-Bulle et al, 2019

Macarena Pavez, Adrian Thompson, Hayden Arnott, Camilla Mitchell, Ilaria D'Atri, Emily Don, John Chilton, Ethan Scott, John Lin, Kaylene Young, Robert Gasperini, and Lisa Foa (2019).
STIM1 is required for remodelling of the endoplasmic reticulum and microtubule cytoskeleton in steering growth cones.
The Journal of Neuroscience. 39 (26): 5095-5114. [IF 5.97].
URL: Pavez et al, 2019


Itia Favre-Bulle, Gilles Vanwallehem, Michael Taylor, Halina Rubinsztein-Dunlop, and Ethan K. Scott (2018).
Cellular resolution imaging of vestibular processing across the larval zebrafish brain.
Current Biology, 28 (23): 3711-3722.
URL: Favre-Bulle et al, 2018.

Michael Taylor, Gilles Vanwalleghem, Itia Favre-Bulle, and Ethan K. Scott (2018).
Diffuse light-sheet microscopy for stripe-free imaging of neural populations.
Journal of Biophotonics. 11(12): 1-9.
URL: Taylor et al, 2018.

Lucy A.L. Heap, Gilles Vanwalleghem, Andrew W. Thompson, Itia A. Favre-Bulle, and Ethan K. Scott (2018). 
Luminance changes drive directional startle through a thalamic pathway.
Neuron. 99(2): 293-301.
URL: Heap et al, 2018.

Lucy Heap, Gilles Claude Vanwalleghem, Andrew Thompson, Itia Favre-Bulle, Halina Rubinsztein-Dunlop, and Ethan K Scott (2018).
Hypothalamic projections to the optic tectum in larval zebrafish.
Frontiers in Neuroanatomy, 11:135.
URL: Heap et al, 2018.

Gilles Vanwalleghem, Misha Ahrens, and Ethan K. Scott (2018).
Integrative whole-brain neuroscience in larval zebrafish.
Current Opinion in Neurobiology.  50: 136-145. 
URL: Vanwallaghem et al, 2018.


Gilles Vanwalleghem, Lucy Heap, and Ethan K. Scott (2017). 
A profile of auditory-responsive neurons in the larval zebrafish brain.
Journal of Comparative Neurology, 525 (14): 3031-3043. 
URL: Vanwalleghem et al, 2017.

Itia Favre-Bulle, Alexander Stilgoe, Halina Rubinsztein-Dunlop, and Ethan Scott (2017).
Optical trapping of otoliths drives vetsibular behaviours in larval zebrafish.
Nature Communications 8: 630
URL: Favre-Bulle et al, 2017.

Lilach Avitan, Zac Pujic, Jan Molter, Matthew Van De Poll, Biao Sun, Haotian Teng, Rumelo Amor, Ethan Scott, and Geoffrey Goodhill (2017).

Spontaneous Activity in the Zebrafish Tectum Reorganizes over Development and Is Influenced by Visual Experience.
Current Biology, 27 (16): 2407-2419.
URL: Avitan et al, 2017.


Andrew W. Thompson and Ethan K. Scott (2016).
Characterisation of sensitivity and orientation tuning for visually responsive ensembles in the zebrafish tectum.
Scientific Reports, 6 (3487): 1-10 
URL: Thompson et al, 2016.

Lilach Avitan, Zac Pujic, Nicholas Hughes, Ethan K. Scott, and Geoffrey J. Goodhill (2016).
Limitations of neural map topography for decoding spatial information.
The Journal of Neuroscience. 36 (19): 5385-5396. 
URL: Avitan et al, 2016.

Andrew W. Thompson, Gilles C. Vanwalleghem, Lucy A. Heap, and Ethan K. Scott (2016).
Functional profiles of visual, auditory, and water flow responsive neurons in the zebrafish tectum. 
Current Biology. 26: 1-12. 
URL: Thompson et al, 2016.

Kelsey Chalmers, Elizabeth M. Kita, Ethan K. Scott, and Geoffrey J. Goodhill (2016).
Quantitative analysis of axonal branch dynamics in the developing nervous system.
PLoS Computational Biology.  12 (3). 
URL: Chalmers et al, 2016.


Itia A. Favre-Bulle, Daryl Preece, Timo A. Nieminen, Lucy A. Heap, Ethan K. Scott*, and Halina Rubinsztein-Dunlop* (*co-corresponding).
Scattering of Sculpted Light in Intact Brain Tissue, with Implications for Optogenetics.
Scientific Reports. 5: 11501. 
URL: Favre-Bulle et al, 2015.

Jacob H. Hines, Andrew R. Ravanelli, Rani Schwindt, Ethan K. Scott, and Bruce Appel (2015).
Activity-dependent competition for axon selection during myelination in vivo.
Nature Neuroscience. 18: 683-689. 
URL: Hines et al, 2015.

Geoffrey J. Goodhill, Richard A. Faville, Daniel J. Sutherland, Brendan A. Bicknell, Andrew W. Thompson, Zac Pujic, Biao Sun, Elizabeth M. Kita, and Ethan K. Scott (2015).
The dynamics of growth cone morphology. 
BMC Biology.  13:10. 
URL: Goodhill et al, 2015.

Elizabeth M. Kita , Ethan K. Scott, and Geoffrey J. Goodhill (2015).
The influence of activity on axon pathfinding in the optic tectum.
Developmental Neurobiology. Published online February 2015.
URL: Kita et al, 2015.

Elizabeth M. Kita , Ethan K. Scott, and Geoffrey J. Goodhill (2015).
Topographic wiring of the retinotectal connection in zebrafish.
Developmental Neurobiology. 75(6): 542-556.
URL: Kita et al, 2015.


Lucy A. Heap, Chi-Ching Goh, Karin S. Kassahn, and Ethan K. Scott (2013).
Cerebellar output in zebrafish: an analysis of spatial patterns and topography in eurydendroid cell projections.
Frontiers in Neural Circuits.  7: 53.
URL: Heap et al. 2013

Hugh D. Simpson, Elizabeth M. Kita, Ethan K. Scott, and Geoffrey J. Goodhill (2013).
A quantitative analysis of branching, growth cone turning and directed growth in zebrafish retinotectal axon guidance.
Journal of Comparative Neurology.  521: 1409-1429.
URL: Simpson et al. 2013


Isabel Formella, Ethan K. Scott, Tom H.J. Burne, Lauren R. Harms, Ashley Liu, Karly M. Turner, Xiaoying Cui, and Darryl W. Eyles (2012).
Transient Knockdown of Tyrosine Hydroxylase during Development Has Persistent Effects on Behaviour in Adult Zebrafish (Danio rerio).
PLoS One. 7 (8).
URL: Formella et al, 2012.

Joshua Simmich, Eric Staykov, and Ethan K. Scott (2012).
Zebrafish as an appealing model system for optogenetics.
Progress in Brain Research. 196: 145-162. 
URL: Simmich et al, 2012.

Phil McClenahan, Michael Troup, and Ethan K. Scott (2012).
Fin-tail Coordination During Escape and Predatory Behavior in Larval Zebrafish. 
PLoS One. 7(2). 
URL: McClenahan et al, 2012


Thomas Burne, Ethan K. Scott, Bruno van Swinderen, Massimo Hilliard, Judith
Reinhard, Charles Claudianos, Darryl Eyles, and John McGrath (2011).
Big ideas for small brains: what can psychiatry learn from worms, flies, bees and fish?
Molecular Psychiatry. 16: 7-16. 
URL: Burne et al, 2011.


Filippo Del Bene, Claire Wyart, Estuardo Robles, Amanda Tran, Loren Looger, Ethan K, Scott, Ehud Y. Isacoff, and Herwig Baier (2010).
Filtering of visual information in the tectum by an identified neural circuit.
Science. 330: 669-673.
URL: Del Bene et al, 2010.

Linda Nevin, Estuardo Robles, Herwig Baier, and Ethan K. Scott (2010).
Focusing on optic tectum circuitry through the lens of genetics.
BMC Biology. 8: 126.
URL: Nevin et al, 2010.

Shuichi Kani, Young-Ki Bae, Takashi Shimizu, Koji Tanabe, Chie Satoh, Mike Parsons,Ethan K. Scott, Shin-ichi Higashijima and Masahiko Hibi (2010).
Proneural gene-linked neurogenesis in zebrafish cerebellum.
Developmental Biology. 343 (1-2): 1-17.
URL: Kani et al, 2010.


Claire Wyart, Filippo Del Bene, Erica Warp, Ethan K. Scott, Dirk Trauner, Herwig Baier and Ehud Isacoff (2009).
Optogenetic dissection of a behavioural module in the vertebrate spinal cord.
Nature. 461: 407-410. 
URL: Wyart et al, 2009.

Herwig Baier and Ethan K. Scott (2009).
Optics and genetics cross paths in the zebrafish nervous system.
Current Opinions in Neurobiology. 19(5): 553-560. 
URL: Baier and Scott, 2009.

Ethan K. Scott and Herwig Baier (2009).
The cellular architecture of the larval zebrafish tectum, as revealed by Gal4 enhancer trap lines.
Frontiers in Neural Circuits. 3(13).
URL: Scott and Baier, 2009.

Ethan K. Scott (2009).
The Gal4/UAS toolbox in zebrafish: New approaches for defining behavioral circuits.
Journal of Neurochemistry. 110(2): 441-456.
URL: Scott, 2009. 

Lisette A. Maddison, Jainjun Lu, Tristan Victoroff, Ethan K. Scott, Herwig Baier, and Wenbiao Chen. (2009).
A gain-of-function screen in zebrafish identifies a guanylate cyclase with a role in neuronal degeneration.
Molecular Genetics and Genomics. 281(5): 551-563.
URL: Maddison et al, 2009.


Stephanie Szobota, Pau Gorostiza, Filippo Del Bene, Claire Wyart, Doris L. Fortin, Kate Kolstad, Orapim Tulyathan, Matthew Volgraf, Rika Numano, Holly Aaron, Ethan K. Scott, Richard Kramer, John Flannery, Herwig Baier, Dirk Trauner and Ehud Isacoff (2007).
Remote control of neuronal activity with a light-gated glutamate receptor.
Neuron. 54(4): 535-545.
URL: Szobota et al, 2007.

Ethan K. Scott, Lindsay Mason, Aristides B. Arrenberg, Limor Ziv, Nathan J. Gosse, Tong Xiao, Neil C. Chi, Kazuhide Asakawa, Koichi Kawakami, and Herwig Baier (2007).
Targeting neural circuitry in zebrafish using GAL4 enhancer trapping.
Nature Methods. 4(4): 323-326.
URL: Scott et al, 2007.