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Dr Nigel Kee

Casual Bioinformatician
Queensland Brain Institute
n.kee@uq.edu.au

Publications

Book Chapter (1)
Journal Articles (13)

Book Chapter

Kee, Nigel and Papathanou, Maria (2021). Single-cell technologies in Parkinson׳s disease. Systems medicine: integrative, qualitative and computational approaches. (pp. 15-30) edited by Olaf Wolkenhauer. Kidlington, Oxford, United Kingdom: Elsevier/Academic Press. doi: 10.1016/b978-0-12-801238-3.11613-7

Journal Articles

Lahti, Laura, Volakakis, Nikolaos, Gillberg, Linda, Yaghmaeian Salmani, Behzad, Tiklová, Katarína, Kee, Nigel, Lundén-Miguel, Hilda, Werkman, Maarten, Piper, Michael, Gronostajski, Richard and Perlmann, Thomas (2025). Sox9 and Nfi transcription factors regulate the timing of neurogenesis and ependymal maturation in dopamine progenitors. Development, 152 (6) dev204421. doi: 10.1242/dev.204421
Aguila, Julio, Cheng, Shangli, Kee, Nigel, Cao, Ming, Wang, Menghan, Deng, Qiaolin and Hedlund, Eva (2021). Spatial RNA sequencing identifies robust markers of vulnerable and resistant human midbrain dopamine neurons and their expression in Parkinson's Disease. Frontiers in Molecular Neuroscience, 14 699562. doi: 10.3389/fnmol.2021.699562
Hagey, Daniel W., Topcic, Danijal, Kee, Nigel, Reynaud, Florie, Bergsland, Maria, Perlmann, Thomas and Muhr, Jonas (2020). CYCLIN-B1/2 and-D1 act in opposition to coordinate cortical progenitor self-renewal and lineage commitment. Nature Communications, 11 (1) 2898, 2898. doi: 10.1038/s41467-020-16597-8
Osman, Ahmed M., Sun, Ying, Burns, Terry C., He, Liqun, Kee, Nigel, Oliva-Vilarnau, Nuria, Alevyzaki, Androniki, Zhou, Kai, Louhivuori, Lauri, Uhlen, Per, Hedlund, Eva, Betsholtz, Christer, Lauschke, Volker M., Kele, Julianna and Blomgren, Klas (2020). Radiation triggers a dynamic sequence of transient microglial alterations in juvenile brain. Cell Reports, 31 (9) 107699, 107699. doi: 10.1016/j.celrep.2020.107699
Nijssen, Jik, Aguila, Julio, Hoogstraaten, Rein, Kee, Nigel and Hedlund, Eva (2018). Axon-seq decodes the motor axon transcriptome and its modulation in response to ALS. Stem Cell Reports, 11 (6), 1565-1578. doi: 10.1016/j.stemcr.2018.11.005
Kirkeby, Agnete, Nolbrant, Sara, Tiklova, Katarina, Heuer, Andreas, Kee, Nigel, Cardoso, Tiago, Ottosson, Daniella Rylander, Lelos, Mariah J., Rifes, Pedro, Dunnett, Stephen B., Grealish, Shane, Perlmann, Thomas and Parmar, Malin (2017). Predictive markers guide differentiation to improve graft outcome in clinical translation of hESC-based therapy for Parkinson's disease. Cell Stem Cell, 20 (1), 135-148. doi: 10.1016/j.stem.2016.09.004
Kee, Nigel, Volakakis, Nikolaos, Kirkeby, Agnete, Dahl, Lina, Storvall, Helena, Nolbrant, Sara, Lahti, Laura, Bjorklund, Asa K., Gillberg, Linda, Joodmardi, Eliza, Sandberg, Rickard, Parmar, Malin and Perlmann, Thomas (2017). Single-cell analysis reveals a close relationship between differentiating dopamine and subthalamic nucleus neuronal lineages. Cell Stem Cell, 20 (1), 29-40. doi: 10.1016/j.stem.2016.10.003
Mong, Jamie, Panman, Lia, Alekseenko, Zhanna, Kee, Nigel, Stanton, Lawrence W., Ericson, Johan and Perlmann, Thomas (2014). Transcription factor-induced lineage programming of noradrenaline and motor neurons from embryonic stem cells. Stem Cells, 32 (3), 609-622. doi: 10.1002/stem.1585
Kee, Nigel, Wilson, Nicole, Key, Brian and Cooper, Helen (2013). Netrin-1 is required for efficient neural tube closure. Developmental Neurobiology, 73 (2), 176-187. doi: 10.1002/dneu.22051
Malewicz, Michal, Kadkhodaei, Banafsheh, Kee, Nigel, Volakakis, Nikolaos, Hellman, Ulf, Viktorsson, Kristina, Leung, Chuen Yan, Chen, Benjamin, Lewensohn, Rolf, van Gent, Dik C., Chen, David J. and Perlmann, Thomas (2011). Essential role for DNA-PK-mediated phosphorylation of NR4A nuclear orphan receptors in DNA double-strand break repair. Genes and Development, 25 (19), 2031-2040. doi: 10.1101/gad.16872411
Panman, Lia, Andersson, Elisabet, Alekseenko, Zhanna, Hedlund, Eva, Kee, Nigel, Mong, Jamie, Uhde, Christopher W., Deng, Qiaolin, Sandberg, Rickard, Stanton, Lawrence W., Ericson, Johan and Perlmann, Thomas (2011). Transcription factor-induced lineage selection of stem-cell-derived neural progenitor cells. Cell Stem Cell, 8 (6), 663-675. doi: 10.1016/j.stem.2011.04.001
Kee, Nigel, Wilson, Nicole, De Vries, Melissa, Bradford, DanaKai, Key, Brian and Cooper, Helen M. (2008). Neogenin and RGMa control neural tube closure and neuroepithelial morphology by regulating cell polarity. The Journal of Neuroscience, 28 (48), 12643-12653. doi: 10.1523/JNEUROSCI.4265-08.2008
Keeble, T. R., Halford, M., Seaman, C., Kee, N., Macheda, M., Andersen, R. B., Stacker, S. A. and Cooper, H. M. (2006). The Wnt receptor Ryk is required for Wnt5a-mediated axon guidance on the contralateral side of the corpus callosum. Journal of Neuroscience, 26 (21), 5840-5848. doi: 10.1523/JNEUROSCI.1175-06.2006
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