Publications

Contributions of luminance and motion to visual escape and habituation in larval zebrafish

Mancienne, Tessa, Marquez-Legorreta, Emmanuel, Wilde, Maya, Piber, Marielle, Favre-Bulle, Itia, Vanwalleghem, Gilles, and Scott, Ethan K. (2021). Contributions of luminance and motion to visual escape and habituation in larval zebrafish. Frontiers in Neural Circuits 15 748535 748535. https://doi.org/10.3389/fncir.2021.748535

Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system

Poulsen, Rebecca E., Scholz, Leandro A., Constantin, Lena, Favre-Bulle, Itia, Vanwalleghem, Gilles C., and Scott, Ethan K. (2021). Broad frequency sensitivity and complex neural coding in the larval zebrafish auditory system. Current Biology 31 (9) 1-11. https://doi.org/10.1016/j.cub.2021.01.103

Sound generation in zebrafish with bio-opto-acoustics

Favre-Bulle, Itia A., Taylor, Michael A., Marquez-Legorreta, Emmanuel, Vanwalleghem, Gilles, Poulsen, Rebecca E., Rubinsztein-Dunlop, Halina, and Scott, Ethan K. (2020). Sound generation in zebrafish with bio-opto-acoustics. Nature Communications 11 (1) 6120 6120. https://doi.org/10.1038/s41467-020-19982-5

Optical tweezers exploring neuroscience

Lenton, Isaac C. D., Scott, Ethan K., Rubinsztein-Dunlop, Halina, and Favre-Bulle, Itia A. (2020). Optical tweezers exploring neuroscience. Frontiers in Bioengineering and Biotechnology 8 602797 602797. https://doi.org/10.3389/fbioe.2020.602797

Optical force measurements illuminate dynamics of Escherichia coli in viscous media

Armstrong, Declan J., Nieminen, Timo A., Favre-Bulle, Itia, Stilgoe, Alexander B., Lenton, Isaac C. D., Schembri, Mark A., and Rubinsztein-Dunlop, Halina (2020). Optical force measurements illuminate dynamics of Escherichia coli in viscous media. Frontiers in Physics 8 575732 . https://doi.org/10.3389/fphy.2020.575732

Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome

Constantin, Lena, Poulsen, Rebecca E., Scholz, Leandro A., Favre-Bulle, Itia A., Taylor, Michael A., Sun, Biao, Goodhill, Geoffrey J., Vanwalleghem, Gilles C., and Scott, Ethan K. (2020). Altered brain-wide auditory networks in a zebrafish model of fragile X syndrome. BMC Biology 18 (1) 125 125. https://doi.org/10.1186/s12915-020-00857-6

Brain-wide mapping of water flow perception in zebrafish

Vanwalleghem, Gilles, Schuster, Kevin, Taylor, Michael A., Favre-Bulle, Itia A., and Scott, Ethan K. (2020). Brain-wide mapping of water flow perception in zebrafish. The Journal of Neuroscience 40 (21) 4130-4144. https://doi.org/10.1523/jneurosci.0049-20.2020

Bio-Opto-Acoustics

Favre-Bulle, Itia and Scott, Ethan(2020). Bio-Opto-Acoustics. The University of Queensland. Data Collection.https://doi.org/10.14264/9809ff7

Optical trapping in vivo: theory, practice, and applications

Favre-Bulle, Itia A., Stilgoe, Alexander B., Scott, Ethan K., and Rubinsztein-Dunlop, Halina (2019). Optical trapping in vivo: theory, practice, and applications. Nanophotonics 8 (6) 1023-1040. https://doi.org/10.1515/nanoph-2019-0055

Cellular-resolution imaging of vestibular processing across the larval zebrafish brain

Favre-Bulle, Itia A., Vanwalleghem, Gilles, Taylor, Michael A., Rubinsztein-Dunlop, Halina, and Scott, Ethan K. (2018). Cellular-resolution imaging of vestibular processing across the larval zebrafish brain. Current Biology 28 (23) 3711-3722. https://doi.org/10.1016/j.cub.2018.09.060

Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations

Taylor, Michael A., Vanwalleghem, Gilles C., Favre-Bulle, Itia A, and Scott, Ethan K. (2018). Diffuse light-sheet microscopy for stripe-free calcium imaging of neural populations. Journal of Biophotonics 11 (12) e201800088 e201800088. https://doi.org/10.1002/jbio.201800088

Luminance changes drive directional startle through a thalamic pathway

Heap, Lucy A. L., Vanwalleghem, Gilles, Thompson, Andrew W., Favre-Bulle, Itia A., and Scott, Ethan K. (2018). Luminance changes drive directional startle through a thalamic pathway. Neuron 99 (2) 293-301.e4. https://doi.org/10.1016/j.neuron.2018.06.013

Optical tweezers bring micromachines to biology

Favre-Bulle, I. A., Zhang, S., Kashchuk, A. V., Lenton, I. C.D., Gibson, L. J., Stilgoe, A. B., Nieminen, T. A., and Rubinsztein-Dunlop, H. (2018). Optical tweezers bring micromachines to biology. Optics and Photonics News 29 (4) 40-47. https://doi.org/10.1364/opn.29.4.000040

Hypothalamic Projections to the Optic Tectum in Larval Zebrafish

Heap, Lucy A., Vanwalleghem, Gilles C., Thompson, Andrew W., Favre-Bulle, Itia, Rubinsztein-Dunlop, Halina, and Scott, Ethan K. (2018). Hypothalamic Projections to the Optic Tectum in Larval Zebrafish. Frontiers in Neuroanatomy 11 135 1-12. https://doi.org/10.3389/fnana.2017.00135

Imaging, manipulation and optogenetics in zebrafish

Favre‐Bulle, Itia Amandine (2018). Imaging, manipulation and optogenetics in zebrafish. Cham, Switzerland: Springer.https://doi.org/10.1007/978-3-319-96250-4

Optical Manipulation of Otoliths In-Vivo

Favre-Bulle, Itia Amandine (2018). Optical Manipulation of Otoliths In-Vivo. Imaging, Manipulation and Optogenetics in Zebrafish. Cham, Switzerland: Springer.63-84.https://doi.org/10.1007/978-3-319-96250-4_6

Optical trapping of otoliths drives vestibular behaviours in larval zebrafish

Favre-Bulle, Itia A., Stilgoe, Alexander B., Rubinsztein-Dunlop, Halina, and Scott, Ethan K. (2017). Optical trapping of otoliths drives vestibular behaviours in larval zebrafish. Nature Communications 8 (1) 630 630. https://doi.org/10.1038/s41467-017-00713-2

Erratum: Ultrasensitive rotating photonic probes for complex biological systems (vol 4, pg 1103, 2017)

Zhang, Shu, Gibson, Lachlan J., Stilgoe, Alexander B., Favre-Bulle, Itia A., Nieminen, Timo A., and Rubinsztein-Dunlop, Halina (2017). Erratum: Ultrasensitive rotating photonic probes for complex biological systems (vol 4, pg 1103, 2017). Optica 4 (11) 1372-1372. https://doi.org/10.1364/OPTICA.4.001372

Ultrasensitive rotating photonic probes for complex biological systems

Zhang, Shu, Gibson, Lachlan J., Stilgoe, Alexander B., Favre-Bulle, Itia A., Nieminen, Timo A. , and Rubinsztein-Dunlop, Halina (2017). Ultrasensitive rotating photonic probes for complex biological systems. Optica 4 (9) 1103-1108. https://doi.org/10.1364/OPTICA.4.001103

Optical manipulation for optogenetics: otoliths manipulation in zebrafish

Favre-Bulle, Itia A., Scott, Ethan, and Rubinsztein-Dunlop, Halina (2016). Optical manipulation for optogenetics: otoliths manipulation in zebrafish. Conference on Biophysics, Biology, and Biophotonics - The Crossroads, San Francisco, CA, United States, 13-14 February 2016. Bellingham, WA, United States: S P I E - International Society for Optical Engineering.https://doi.org/10.1117/12.2216554

Sensory integration in the Zebrafish brain, what are the functions of the thalamus and the cerebellum ?

Vanwalleghem, Gilles, Heap, Lucy A., Favre-Bulle, Itia, Schuster, Kevin, Thompson, Andrew, and Scott, Ethan K. (2015). Sensory integration in the Zebrafish brain, what are the functions of the thalamus and the cerebellum ?. Neuroinformatics 2015, Cairns, Australia, 20-22 August, 2015. Lausanne Switzerland: Frontiers.https://doi.org/10.3389/conf.fnins.2015.91.00018

Computational modeling of scattering of a focused beam in zebrafish brain tissue

Favre-Bulle, Itia, Nieminen, Timo A., Preece, Daryl, Heap, Lucy A., Scott, Ethan K., and Rubinsztein-Dunlop, Halina (2015). Computational modeling of scattering of a focused beam in zebrafish brain tissue. Optics and the Brain, BRAIN 2015, Vancouver, BC, Canada, 12-15 April 2015. Washington, DC, USA: OSA - The Optical Society.https://doi.org/10.1364/BODA.2015.JT3A.34

Scattering of sculpted light in intact brain tissue, with implications for optogenetics

Favre-Bulle, Itia A., Preece, Daryl, Nieminen, Timo A., Heap, Lucy A., Scott, Ethan K., and Rubinsztein-Dunlop, Halina (2015). Scattering of sculpted light in intact brain tissue, with implications for optogenetics. Scientific Reports 5 (1) 11501 1-9. https://doi.org/10.1038/srep11501

High-speed camera system for biological applications in optical tweezing

Favre-Bulle, Itia, Preece, Daryl, Nieminen, Timo A., Heckenberg, Norman, and Rubinsztein-Dunlop, Halina (2011). High-speed camera system for biological applications in optical tweezing. International Quantum Electronics Conference, IQEC 2011 and Conference on Lasers and Electro-Optics, CLEO Pacific Rim 2011, Sydney, NSW Australia, 28 August - 1 September 2011. Piscataway, NJ United States: I E E E.https://doi.org/10.1109/IQEC-CLEO.2011.6194030